01 |
Daniel Strobl & Shrey Parikh |
An integrated human pancreas cell atlas: disentangling cellular heterogeneity beyond the islets |
02 |
Adam Boxall |
Applying machine learning models to a new cell-resolution spatial atlas of renal cell carcinoma reveals vascular and immunological cellular phenotypes |
03 |
Sharon Yan Xue |
Mapping Spatial Trajectory Transitions and Cellular Crosstalk in Chondrosarcoma Using Multi-modal Transcriptomics |
04 |
Jian He |
Leveraging single-cell RNA-seq for uncovering naïve B cells as a prognosis biomarker of hepatocellular carcinoma |
05 |
Bruno Matuck |
The Immunoregulatory Architecture of the Adult Oral Cavity |
06 |
Osmaray Morales |
Early Transcriptional, Genomic Alterations of Fallopian Tubes from Germline BRCA1/2 Mutations Carriers from Diverse Genomic Ancestral Backgrounds |
07 |
Lloyd Steele |
A single cell and spatial genomics atlas of human skin fibroblasts in health and disease |
08 |
Xiaohan Xu |
Construct a Paediatric Immune Cell Atlas for Children’s Immunotherapy Innovation (PICACHIU) |
09 |
Ana-Maria
Cujba |
A large single-cell atlas of healthy and COVID-19 PBMCs |
10 |
Jones
Gyamfi |
Exploring heterogeneity of triple negative breast cancers via single-cell transcriptomics |
11 |
Muhamad Fachrul |
The batch conundrum; challenges in disentangling ancestral and environmental impact on Indonesian single-cell immune expression |
12 |
Pongsakorn Sukonthamarn |
Characterising the diversity of T cell receptor repertoires across Indonesian populations |
13 |
Rakesh Pandey |
Exploring the Gene Regulatory Network Involved in the Drug Resistance for Chronic Myeloid Leukemia using Single Cell Data |
14 |
Joseph
Phiri |
Chronic nasal neutrophilic inflammation in adults living with HIV on suppressive antiretroviral therapy |
15 |
Yongjoon Jin |
Longitudinally Tracked Oral squamous cell carcinoma Samples Uncover a RecurrenceAssociated partial-EMT Subpopulation with Therapy Resistance |
16 |
Hanjae Lee |
A Multi-Omic Single-Cell Analysis of Perinatal Mouse Skin Maps Lineage Specification and Uncovers Shared Dynamics in Human Fetal Skin |
17 |
Min Chul Joen |
High-Throughput Single-Cell Multiomics Analysis of Lung Tissue and PBMCs Using a Novel Multiplexing Library Method |
18 |
Dakyung Lee |
scClovaX: Single-Cell AI using Foundational Model |
19 |
Kyunghyuk Park |
Developing Single-Cell Long-Read Epigenomic Library Methods: Identifying Epigenetic Co-regulatory Regions |
20 |
Boxiang Liu |
Integration and Annotation of Spatial Multi-Omic Data with DIRAC Highlights Spatial Organization of Lymphoid Organs |
21 |
Sean Zheng |
A spatial multi-omic map of the human heart across the spectrum of health and disease |
22 |
Yuntian Zhang |
ISSAC: A splice-site based binomial mixed model association tool targeting single-cell sQTL analysis |
23 |
Yejin Kwak |
HCA | Organoid data portal: a comprehensive web-based database for organoids |
24 |
Pratibha Panwar (presented by Daniel Kim in-person) |
ClustSIGNAL: a method for cell-type clustering using Spatially Informed Gene expression with Neighbourhood Adapted Learning |
25 |
Xin Yi Than |
scCLINIC: Explainable detection of multiplets and other artifact cells in single cell RNA-seq and spatial transcriptomics |
26 |
Pablo
Siliceo |
Topological data analysis identifies conserved multiscale geometrical features associated with immune exhaustion in squamous cell carcinomas |
27 |
Chi Tian |
Single-cell RNA-seq empowers discovery of thousands of genetic loci that regulate splicing in distinct cell types of PBMC |
28 |
Jingwen Fang |
scPERT: A Single-Cell Perturbation Enhanced Representation Transformer Through Supervised Fine-Tuning Using Thaoe-100M |
29 |
Duong Hoang Huy Le |
Leveraging Machine Learning and HCV Genomic Profiles to Predict Treatment Outcomes: Implications for Personalized Medicine. |
30 |
Drew Neavin |
Curation of diversity demographics in single-cell atlases identifies sampling biases |
31 |
Shuyan Wang |
Denoising spatial epigenomic data by deep matrix factorization |
32 |
Jagadish
Sankaran |
Multimodal inference of morphogenomic phenotypes using morphology and expression data optimal clustering (MEDOC) |
33 |
Rokhyun Kim |
Genomic and transcriptomic characterization of metastatic potential in primary breast cancer |
34 |
Kian Hong Kock |
Asian diversity in human immune cells |
35 |
Hyun Lee |
Optimizing Human Intestinal Organoid Culture through In Silico Modeling of Single-Cell Transcriptomic Data |
36 |
Wai Theng Mak |
Identification of Therapeutics to Treat Scleroderma |
37 |
Wamia
Said & Sergio Aguilar-Fernandez |
A Biologically Informed Framework for Evaluating Single-Cell Integration in Large-Scale Atlases |
38 |
Pragya Rawat & Sergio Aguilar-Fernandez |
A Single-Cell Atlas of TCR Clonality and T Cell States in Blood Across Health and Disease |
39 |
Kyle Kimler & Christopher Lance |
Creation of the HCA Integrated Gut Cell Atlas |
40 |
Seokjun Lee |
Understanding Gut Segment-Specific Epigenetic Changes in Crohn’s Disease through Single-cell Multi-omics Profiling |
41 |
Jaeyong Choi |
Single cell eQTL mapping during lung airway epithelium differentiation with organoid bank |
42 |
Soyoung
Jeong |
High resolution spatial cancer atlas in Korea |
43 |
Christine Joh |
Elucidating gut epithelial dynamics and immune signatures in Inflammatory Bowel Disease Cohorts |
44 |
Sowon Choi |
High resolution spatial cancer atlas in Korea |
45 |
Merve
Kahraman |
Spatial Architecture of Microsatellite Stable Colon Cancer Under Chemoimmunotherapy |
46 |
Yewon Moon |
A single cell transcriptomic atlas of the pediatric rheumatologis disease |
47 |
Jahanzeb Saqib |
Identification of Niche-Specific Gene Signatures between Malignant Tumor Microenvironments by Integrating Single Cell and Spatial Transcriptomics Data |
48 |
Yufeng He |
DISSECT integrates cytological images and spatial transcriptomics for cell segmentation |
49 |
Lijia Yu |
Exploring interpretable differential abundance signature with iDAS |
50 |
Onkar
Mulay |
IoC: Analysing Interorgan Communications in Aging and Metastasis |
51 |
Ce Lou |
Integrated computational analysis identifies therapeutic targets with dual action in cancer cells and T cells |
52 |
Brian Lee |
Unravelling Gene Regulatory Networks in CD4+ Regulatory T cell Lineage Commitment in the Thymus |
53 |
Sebastian Birk |
NicheCompass: Quantitative characterization of cell niches in spatially resolved omics data |
54 |
Xiao Tan |
FSTimage: A Foundation Model-Powered Framework for Robust and Interpretable Gene Expression Prediction Using Spatial Transcriptomics |