Poster Presenters: 2025 Human Cell Atlas General Meeting

Poster Number	Poster Presenter	Title (click the title to view the poster abstract)
01	Daniel Strobl & Shrey Parikh	An integrated human pancreas cell atlas: disentangling cellular heterogeneity beyond the islets
02	Adam Boxall	Applying machine learning models to a new cell-resolution spatial atlas of renal cell carcinoma reveals vascular and immunological cellular phenotypes
03	Sharon Yan Xue	Mapping Spatial Trajectory Transitions and Cellular Crosstalk in Chondrosarcoma Using Multi-modal Transcriptomics
04	Jian He	Leveraging single-cell RNA-seq for uncovering naïve B cells as a prognosis biomarker of hepatocellular carcinoma
05	Bruno Matuck	The Immunoregulatory Architecture of the Adult Oral Cavity
06	Osmaray Morales	Early Transcriptional, Genomic Alterations of Fallopian Tubes from Germline BRCA1/2 Mutations Carriers from Diverse Genomic Ancestral Backgrounds
07	Lloyd Steele	A single cell and spatial genomics atlas of human skin fibroblasts in health and disease
08	Xiaohan Xu	Construct a Paediatric Immune Cell Atlas for Children’s Immunotherapy Innovation (PICACHIU)
09	Ana-Maria Cujba	A large single-cell atlas of healthy and COVID-19 PBMCs
10	Jones Gyamfi	Exploring heterogeneity of triple negative breast cancers via single-cell transcriptomics
11	Muhamad Fachrul	The batch conundrum; challenges in disentangling ancestral and environmental impact on Indonesian single-cell immune expression
12	Pongsakorn Sukonthamarn	Characterising the diversity of T cell receptor repertoires across Indonesian populations
13	Rakesh Pandey	Exploring the Gene Regulatory Network Involved in the Drug Resistance for Chronic Myeloid Leukemia using Single Cell Data
14	Joseph Phiri	Chronic nasal neutrophilic inflammation in adults living with HIV on suppressive antiretroviral therapy
15	Yongjoon Jin	Longitudinally Tracked Oral squamous cell carcinoma Samples Uncover a RecurrenceAssociated partial-EMT Subpopulation with Therapy Resistance
16	Hanjae Lee	A Multi-Omic Single-Cell Analysis of Perinatal Mouse Skin Maps Lineage Specification and Uncovers Shared Dynamics in Human Fetal Skin
17	Min Chul Joen	High-Throughput Single-Cell Multiomics Analysis of Lung Tissue and PBMCs Using a Novel Multiplexing Library Method
18	Dakyung Lee	scClovaX: Single-Cell AI using Foundational Model
19	Kyunghyuk Park	Developing Single-Cell Long-Read Epigenomic Library Methods: Identifying Epigenetic Co-regulatory Regions
20	Boxiang Liu	Integration and Annotation of Spatial Multi-Omic Data with DIRAC Highlights Spatial Organization of Lymphoid Organs
21	Sean Zheng	A spatial multi-omic map of the human heart across the spectrum of health and disease
22	Yuntian Zhang	ISSAC: A splice-site based binomial mixed model association tool targeting single-cell sQTL analysis
23	Yejin Kwak	HCA \| Organoid data portal: a comprehensive web-based database for organoids
24	Pratibha Panwar (presented by Daniel Kim in-person)	ClustSIGNAL: a method for cell-type clustering using Spatially Informed Gene expression with Neighbourhood Adapted Learning
25	Xin Yi Than	scCLINIC: Explainable detection of multiplets and other artifact cells in single cell RNA-seq and spatial transcriptomics
26	Pablo Siliceo	Topological data analysis identifies conserved multiscale geometrical features associated with immune exhaustion in squamous cell carcinomas
27	Chi Tian	Single-cell RNA-seq empowers discovery of thousands of genetic loci that regulate splicing in distinct cell types of PBMC
28	Jingwen Fang	scPERT: A Single-Cell Perturbation Enhanced Representation Transformer Through Supervised Fine-Tuning Using Thaoe-100M
29	Duong Hoang Huy Le	Leveraging Machine Learning and HCV Genomic Profiles to Predict Treatment Outcomes: Implications for Personalized Medicine.
30	Drew Neavin	Curation of diversity demographics in single-cell atlases identifies sampling biases
31	Shuyan Wang	Denoising spatial epigenomic data by deep matrix factorization
32	Jagadish Sankaran	Multimodal inference of morphogenomic phenotypes using morphology and expression data optimal clustering (MEDOC)
33	Rokhyun Kim	Genomic and transcriptomic characterization of metastatic potential in primary breast cancer
34	Kian Hong Kock	Asian diversity in human immune cells
35	Hyun Lee	Optimizing Human Intestinal Organoid Culture through In Silico Modeling of Single-Cell Transcriptomic Data
36	Wai Theng Mak	Identification of Therapeutics to Treat Scleroderma
37	Wamia Said & Sergio Aguilar-Fernandez	A Biologically Informed Framework for Evaluating Single-Cell Integration in Large-Scale Atlases
38	Pragya Rawat & Sergio Aguilar-Fernandez	A Single-Cell Atlas of TCR Clonality and T Cell States in Blood Across Health and Disease
39	Kyle Kimler & Christopher Lance	Creation of the HCA Integrated Gut Cell Atlas
40	Seokjun Lee	Understanding Gut Segment-Specific Epigenetic Changes in Crohn’s Disease through Single-cell Multi-omics Profiling
41	Jaeyong Choi	Single cell eQTL mapping during lung airway epithelium differentiation with organoid bank
42	Soyoung Jeong	High resolution spatial cancer atlas in Korea
43	Christine Joh	Elucidating gut epithelial dynamics and immune signatures in Inflammatory Bowel Disease Cohorts
44	Sowon Choi	High resolution spatial cancer atlas in Korea
45	Merve Kahraman	Spatial Architecture of Microsatellite Stable Colon Cancer Under Chemoimmunotherapy
46	Yewon Moon	A single cell transcriptomic atlas of the pediatric rheumatologis disease
47	Jahanzeb Saqib	Identification of Niche-Specific Gene Signatures between Malignant Tumor Microenvironments by Integrating Single Cell and Spatial Transcriptomics Data
48	Yufeng He	DISSECT integrates cytological images and spatial transcriptomics for cell segmentation
49	Lijia Yu	Exploring interpretable differential abundance signature with iDAS
50	Onkar Mulay	IoC: Analysing Interorgan Communications in Aging and Metastasis
51	Ce Luo	Integrated computational analysis identifies therapeutic targets with dual action in cancer cells and T cells
52	Brian Lee	Unravelling Gene Regulatory Networks in CD4+ Regulatory T cell Lineage Commitment in the Thymus
53	Sebastian Birk	NicheCompass: Quantitative characterization of cell niches in spatially resolved omics data
54	Xiao Tan	FSTimage: A Foundation Model-Powered Framework for Robust and Interpretable Gene Expression Prediction Using Spatial Transcriptomics

Poster Presenter	Title (click the title to view abstract)
Maryam Ijaz	Absence of GSTT1 and polymorphisms in GSTP1 and TP53 are associated with the incidence of acne vulgaris
Samuel Eyrolle-Cellier	Identification of hormone-sensitive breast and endometrial cancer biomarkers through bulk multi-omics data integration and single-cell RNA-sequencing dataset integration
Rajveer Singh Shekhawat	Identification of novel cell-type-specific genetic variants underlying type 2 diabetes pathogenesis using single-cell ATAC-seq
Sudipta Chakraborty	Exploring the Role of CNTNAP5 in Retinal Neurodegeneration: Insights from the Single-Cell Atlas of the Human Retina
Jovanka Ravix	Single-Nucleus Transcriptomic Profiling of Normal Breast Tissue from Diverse Ancestries Reveals Ancestry-Driven Cellular Heterogeneity
Emmanuel Lamptey	Molecular Basis of The Inverse Association Between Alzheimer’s Disease and Cancer. An In-Silico Analysis.
Marwa Mahdouani	Impact of functional analysis on the classification of a VUS variant implicated in the development of constitutional MMR deficiency (CMMRD) syndrome
Shramana Koner	Elucidating the effects of naturally weathered aged-polypropylene microplastics and newly procured polypropylene microplastics on raw 264.7 macrophages

55	Duy Pham	An atlas of transcription factor driven gene programs across cell types and tissues
56	Kevin Chi Hao Ly	Generative deep learning to unravel biological dynamics over time
57	Daniyal Jafree	A single-cell atlas of human lymphatic endothelial cells reveals a kidney-specific molecular signature with implications for renal immunity
58	Lijiang Fei	An integrated cross-tissue single-cell atlas of human hormone interactions
59	Grace Yeo & Bo Li	Spatial omics reveals regional neighborhoods associated with intra- tumoral epithelial heterogeneity in colorectal cancer
60	Lennard Halle	Update on the cross-publication integrated atlas of the human heart
61	Elias Farr	Mapping the developmental human hair follicle using spatial transcriptomics
62	Puttanun Ukhampun	Integrative profiling of single-cell expression and clonal expansion of circulating CD8+ T population in meningioma
63	Vairavan Lakshmanan	ctQC improves biological inferences from single cell and spatial transcriptomics data
64	Ying Wong	From birth to disease: Multiomic profiling reveals the earliest immune drivers in Type 1 diabetes (T1D)
65	Jaewoo Mo	Pan-cancer analysis of tumor microenvironments cell-cell interactions using large-scale scRNAseq and Visium data
66	Hyeonkyu Kim	TENET+: a tool for reconstructing gene networks by integrating single cell expression and chromatin accessibility data
67	Jeonghwan Kim	CellCraft: a web-based application for single-cell analysis for reconstructing gene regulatory networks
68	Michaela Muller	A toolbox for construction and quality evaluation of biologically optimised single cell reference atlases
69	Mattia Gerli	Drafting a single cell amniotic fluid atlas as it changes across human developmentand in presence of congenital disease.
70	Preonath Dev	Building a single-cell atlas of the nasopharyngeal mucosa to investigate RSV and SARS-CoV-2 infection
71	Deb Perna Keya	Harnessing single cell genomics to understand pathophysiology of RSV infection in the nasal mucosa of children
72	Quan Nguyen	Decoding Therapy Resistance in Glioblastoma: Insights from Single-cell RNA Sequencing of Matched Primary-Recurrent Patient-Derived Gliomaspheres
73	Reema Baskar	Spatial Profiling of Colorectal Cancer Extracellular Milieu Reveals Axes of Immunosuppression and Inflammation
74	Yongjun Koh	Generation of human tissue-derived thymic epithelial organoids
75	Sungmin Cheong	Deciphering immune heterogeneity in response to first-line therapy in patients with multiple sclerosis
76	Bryan John Magoling	Distinct proteomes of TNBC-derived big and small extracellular vesicles influence their in vivo biodistribution and tumorigenic potentials via surface membrane proteins
77	Qifei Wang	Hierarchical Interpretation of Out-of-Distribution Cells Using Bottlenecked Transformer
78	Camino Ruano	Single-Cell Atlas of Liposarcoma: From In-Vivo to In-Vitro
79	Go Sato	Multi-layered single-cell genomics deconvolutes biological mechanisms underlying clonal hematopoiesis and mitochondrial heteroplasmy in infectious & autoimmune diseases
80	Daniel Kim	Multi-view gene panel characterization for spatially resolved omics
81	Kunal Mishra	Spatial transcriptomics profiling of lupus nephritis patients identifies fibroblast proximity as a driver of profibrotic SPP1+ macrophage polarisation
82	Xiaomeng Wan	Zero-Shot Foundation Model for a Universal Gene Expression Atlas of Human Tissue: Unveiling Clinically Relevant Cell States and Disease-Specific Spatial Niches
83	Andrew Zhang	Spatial gene expression at single-cell resolution from histology using deep learning with GHIST
84	Amrita Singh	Constitutive activation of β-catenin in hem progenitors in the early mouse brain suppresses the fate of hem-derived Cajal-Retzius cells
85	Lan Jiang	AI-Driven Cross-scale Modeling of Virtual Cell
86	Bram Lim	A non-canonical lymphoblast in refractory childhood T-cell leukaemia
87	Angli Xue	Genetic regulation of cell-type–specific chromatin accessibility shapes blood immune functions and autoimmune disease risk
88	Ryuya Edahiro	Deciphering state-dependent immune features at single-cell resolution from multi-layer human omics including transcriptomics, host genetics, metagenomics, and plasma proteomics data
89	Sefi Prawer (presented by Michael Clark)	Unlocking the hidden world of RNA isoforms in single cells using long-read sequencing
90	Jeesoo Chae	Transcriptional Landscapes of Dendritic Cells Induced by GM-CSF and FLT3L
91	Ida Zucchi & Arsenios Chatzigeorgiou	From V1 atlases to deeper biological insights - HCA Tier 2 metadata
92	Apurba Malaker	Impact of PCV-10 vaccination on the immune cell population of pre-term infants in rural Bangladesh
93	Ankita Chatterjee	Immunological Consequences of Smoking: Comprehensive scRNAseq profiling of 1.2 million PBMCs across 619 Asians in AIDA consortium
94	Muhammad Latif	Prevalence and Risk Factors of MODY in Multan, Punjab, Pakistan
95	Branco Heuts	An integrated single cell atlas of human adipose tissue
96	Yongxin (Kiki) Kong	Chinese Human Reference Atlas Mirror: Setup, Localization, and Usage
97	Sik Loo Tan	Differential Expression Profiles of Exosomal-miRNAs in Systemic Circulation and Synovial Fluid of Osteoarthritis Patients
98	Mohammed Khan	Redox Influx and Proteomic Diversity in Non-Enzymatic Glycation-Driven Disease Progression: Epigenetic and Molecular Insights