Poster Presenters

Poster Number

Poster Presenter

Title (click the title to view the poster abstract)

01

Daniel Strobl & Shrey Parikh

An integrated human pancreas cell atlas: disentangling cellular heterogeneity beyond the islets

02

Adam Boxall

Applying machine learning models to a new cell-resolution spatial atlas of renal cell carcinoma reveals vascular and immunological cellular phenotypes

03

Sharon Yan Xue

Mapping Spatial Trajectory Transitions and Cellular Crosstalk in Chondrosarcoma Using Multi-modal Transcriptomics

04

Jian He

Leveraging single-cell RNA-seq for uncovering naïve B cells as a prognosis biomarker of hepatocellular carcinoma

05

Bruno Matuck

The Immunoregulatory Architecture of the Adult Oral Cavity

06

Osmaray Morales

Early Transcriptional, Genomic Alterations of Fallopian Tubes from Germline BRCA1/2 Mutations Carriers from Diverse Genomic Ancestral Backgrounds

07

Lloyd Steele

A single cell and spatial genomics atlas of human skin fibroblasts in health and disease

08

Xiaohan Xu

Construct a Paediatric Immune Cell Atlas for Children’s Immunotherapy Innovation (PICACHIU)

09

Ana-Maria  Cujba

A large single-cell atlas of healthy and COVID-19 PBMCs

10

Jones  Gyamfi

Exploring heterogeneity of triple negative breast cancers via single-cell transcriptomics

11

Muhamad Fachrul

The batch conundrum; challenges in disentangling ancestral and environmental impact on Indonesian single-cell immune expression

12

Pongsakorn Sukonthamarn

Characterising the diversity of T cell receptor repertoires across Indonesian populations

13

Rakesh Pandey

Exploring the Gene Regulatory Network Involved in the Drug Resistance for Chronic Myeloid Leukemia using Single Cell Data

14

Joseph  Phiri

Chronic nasal neutrophilic inflammation in adults living with HIV on suppressive antiretroviral therapy

15

Yongjoon Jin

Longitudinally Tracked Oral squamous cell carcinoma Samples Uncover a RecurrenceAssociated partial-EMT Subpopulation with Therapy Resistance

16

Hanjae Lee

A Multi-Omic Single-Cell Analysis of Perinatal Mouse Skin Maps Lineage Specification and Uncovers Shared Dynamics in Human Fetal Skin

17

Min Chul Joen

High-Throughput Single-Cell Multiomics Analysis of Lung Tissue and PBMCs Using a Novel Multiplexing Library Method

18

Dakyung Lee

scClovaX: Single-Cell AI using Foundational Model

19

Kyunghyuk Park

Developing Single-Cell Long-Read Epigenomic Library Methods: Identifying Epigenetic Co-regulatory Regions

20

Boxiang Liu

Integration and Annotation of Spatial Multi-Omic Data with DIRAC Highlights Spatial Organization of Lymphoid Organs

21

Sean Zheng

A spatial multi-omic map of the human heart across the spectrum of health and disease

22

Yuntian Zhang

ISSAC: A splice-site based binomial mixed model association tool targeting single-cell sQTL analysis

23

Yejin Kwak

HCA | Organoid data portal: a comprehensive web-based database for organoids

24

Pratibha Panwar (presented by Daniel Kim in-person)

ClustSIGNAL: a method for cell-type clustering using Spatially Informed Gene expression with Neighbourhood Adapted Learning

25

Xin Yi Than

scCLINIC: Explainable detection of multiplets and other artifact cells in single cell RNA-seq and spatial transcriptomics

26

Pablo Siliceo

Topological data analysis identifies conserved multiscale geometrical features associated with immune exhaustion in squamous cell carcinomas

27

Chi Tian

Single-cell RNA-seq empowers discovery of thousands of genetic loci that regulate splicing in distinct cell types of PBMC

28

Jingwen Fang

scPERT: A Single-Cell Perturbation Enhanced Representation Transformer Through Supervised Fine-Tuning Using Thaoe-100M

29

Duong Hoang Huy Le

Leveraging Machine Learning and HCV Genomic Profiles to Predict Treatment Outcomes: Implications for Personalized Medicine.

30

Drew Neavin

Curation of diversity demographics in single-cell atlases identifies sampling biases

31

Shuyan Wang

Denoising spatial epigenomic data by deep matrix factorization

32

Jagadish  Sankaran

Multimodal inference of morphogenomic phenotypes using morphology and expression data optimal clustering (MEDOC)

33

Rokhyun Kim

Genomic and transcriptomic characterization of metastatic potential in primary breast cancer

34

Kian Hong Kock

Asian diversity in human immune cells

35

Hyun Lee

Optimizing Human Intestinal Organoid Culture through In Silico Modeling of Single-Cell Transcriptomic Data

36

Wai Theng Mak

Identification of Therapeutics to Treat Scleroderma

37

Wamia  Said & Sergio Aguilar-Fernandez

A Biologically Informed Framework for Evaluating Single-Cell Integration in Large-Scale Atlases

38

Pragya Rawat & Sergio Aguilar-Fernandez

A Single-Cell Atlas of TCR Clonality and T Cell States in Blood Across Health and Disease

39

Kyle Kimler & Christopher Lance

Creation of the HCA Integrated Gut Cell Atlas

40

Seokjun Lee

Understanding Gut Segment-Specific Epigenetic Changes in Crohn’s Disease through Single-cell Multi-omics Profiling

41

Jaeyong Choi

Single cell eQTL mapping during lung airway epithelium differentiation with organoid bank

42

Soyoung  Jeong

High resolution spatial cancer atlas in Korea

43

Christine Joh

Elucidating gut epithelial dynamics and immune signatures in Inflammatory Bowel Disease Cohorts

44

Sowon Choi

High resolution spatial cancer atlas in Korea

45

Merve  Kahraman

Spatial Architecture of Microsatellite Stable Colon Cancer Under Chemoimmunotherapy

46

Yewon Moon

A single cell transcriptomic atlas of the pediatric rheumatologis disease

47

Jahanzeb Saqib

Identification of Niche-Specific Gene Signatures between Malignant Tumor Microenvironments by Integrating Single Cell and Spatial Transcriptomics Data

48

Yufeng He

DISSECT integrates cytological images and spatial transcriptomics for cell segmentation

49

Lijia Yu

Exploring interpretable differential abundance signature with iDAS

50

Onkar  Mulay

IoC: Analysing Interorgan Communications in Aging and Metastasis

51

Ce Lou

Integrated computational analysis identifies therapeutic targets with dual action in cancer cells and T cells

52

Brian Lee

Unravelling Gene Regulatory Networks in CD4+ Regulatory T cell Lineage Commitment in the Thymus

53

Sebastian Birk

NicheCompass: Quantitative characterization of cell niches in spatially resolved omics data

54

Xiao Tan

FSTimage: A Foundation Model-Powered Framework for Robust and Interpretable Gene Expression Prediction Using Spatial Transcriptomics

55

Duy Pham

An atlas of transcription factor driven gene programs across cell types and tissues

56

Kevin Chi Hao Ly

Generative deep learning to unravel biological dynamics over time

57

Daniyal Jafree

A single-cell atlas of human lymphatic endothelial cells reveals a kidney-specific molecular signature with implications for renal immunity

58

Lijiang Fei

An integrated cross-tissue single-cell atlas of human hormone interactions

59

Grace Yeo & Bo Li

Spatial omics reveals regional neighborhoods associated with intra- tumoral epithelial heterogeneity in colorectal cancer

60

Lennard Halle

Update on the cross-publication integrated atlas of the human heart

61

Elias Farr

Mapping the developmental human hair follicle using spatial transcriptomics

62

Puttanun  Ukhampun

Integrative profiling of single-cell expression and clonal expansion of circulating CD8+ T population in meningioma

63

Vairavan  Lakshmanan

ctQC improves biological inferences from single cell and spatial transcriptomics data

64

Ying Wong

From birth to disease: Multiomic profiling reveals the earliest immune drivers in Type 1 diabetes (T1D)

65

Jaewoo Mo

Pan-cancer analysis of tumor microenvironments cell-cell interactions using large-scale scRNAseq and Visium data

66

Hyeonkyu Kim

TENET+: a tool for reconstructing gene networks by integrating single cell expression and chromatin accessibility data

67

Jeonghwan Kim

CellCraft: a web-based application for single-cell analysis for reconstructing gene regulatory networks

68

Michaela Muller

A toolbox for construction and quality evaluation of biologically optimised single cell reference atlases

69

Mattia Gerli

Drafting a single cell amniotic fluid atlas as it changes across human developmentand in presence of congenital disease.

70

Preonath Dev

Building a single-cell atlas of the nasopharyngeal mucosa to investigate RSV and SARS-CoV-2 infection

71

Deb Perna Keya

Harnessing single cell genomics to understand pathophysiology of RSV infection in the nasal mucosa of children

72

Quan Nguyen

Decoding Therapy Resistance in Glioblastoma: Insights from Single-cell RNA Sequencing of Matched Primary-Recurrent Patient-Derived Gliomaspheres

73

Reema Baskar

Spatial Profiling of Colorectal Cancer Extracellular Milieu Reveals Axes of Immunosuppression and Inflammation

74

Yongjun Koh

Generation of human tissue-derived thymic epithelial organoids

75

Sungmin Cheong

Deciphering immune heterogeneity in response to first-line therapy in patients with multiple sclerosis

76

Bryan John Magoling

Distinct proteomes of TNBC-derived big and small extracellular vesicles influence their in vivo biodistribution and tumorigenic potentials via surface membrane proteins

77

Qifei Wang

Hierarchical Interpretation of Out-of-Distribution Cells Using Bottlenecked Transformer

78

Camino Ruano

Single-Cell Atlas of Liposarcoma: From In-Vivo to In-Vitro

79

Go Sato

Multi-layered single-cell genomics deconvolutes biological mechanisms underlying clonal hematopoiesis and mitochondrial heteroplasmy in infectious & autoimmune diseases

80

Daniel Kim

Multi-view gene panel characterization for spatially resolved omics

81

Kunal Mishra

Spatial transcriptomics profiling of lupus nephritis patients identifies fibroblast proximity as a driver of profibrotic SPP1+ macrophage polarisation

82

Xiaomeng Wan

Zero-Shot Foundation Model for a Universal Gene Expression Atlas of Human Tissue: Unveiling Clinically Relevant Cell States and Disease-Specific Spatial Niches

83

Andrew Zhang

Spatial gene expression at single-cell resolution from histology using deep learning with GHIST

84

Amrita Singh

Constitutive activation of β-catenin in hem progenitors in the early mouse brain suppresses the fate of hem-derived Cajal-Retzius cells

85

Lan Jiang

AI-Driven Cross-scale Modeling of Virtual Cell

86

Bram Lim

A non-canonical lymphoblast in refractory childhood T-cell leukaemia

87

Angli Xue

Genetic regulation of cell-type–specific chromatin accessibility shapes blood immune functions and autoimmune disease risk

88

Ryuya  Edahiro

Deciphering state-dependent immune features at single-cell resolution from multi-layer human omics including transcriptomics, host genetics, metagenomics, and plasma proteomics data

89

Sefi Prawer (presented by Michael Clark)

Unlocking the hidden world of RNA isoforms in single cells using long-read sequencing

90

Jeesoo Chae

Transcriptional Landscapes of Dendritic Cells Induced by GM-CSF and FLT3L

91

Ida Zucchi & Arsenios Chatzigeorgiou

From V1 atlases to deeper biological insights - HCA Tier 2 metadata

92

Apurba  Malaker

Impact of PCV-10 vaccination on the immune cell population of pre-term infants in rural Bangladesh

93

Ankita Chatterjee

Immunological Consequences of Smoking: Comprehensive scRNAseq profiling of 1.2 million PBMCs across 619 Asians in AIDA consortium

94

Muhammad Latif

Prevalence and Risk Factors of MODY in Multan, Punjab, Pakistan

95

Branco Heuts

An integrated single cell atlas of human adipose tissue

96

Yongxin (Kiki) Kong

Chinese Human Reference Atlas Mirror: Setup, Localization, and Usage

97

Sik Loo Tan

Differential Expression Profiles of Exosomal-miRNAs in Systemic Circulation and Synovial Fluid of Osteoarthritis Patients

98

Mohammed Khan

Redox Influx and Proteomic Diversity in Non-Enzymatic Glycation-Driven Disease Progression: Epigenetic and Molecular Insights

Poster Presenters Unable to Attend In-Person